Index

A

all_job_ids() (HTSeqCountCluster.pbsjob.qstat.Qstat method)

all_queued_jobs() (HTSeqCountCluster.pbsjob.qstat.Qstat method) all_running_jobs() (HTSeqCountCluster.pbsjob.qstat.Qstat method)

B

basejobids() (in module HTSeqCountCluster.pbsjob.pbsutils)

BasePBSJob (class in HTSeqCountCluster.pbsjob.pbsjob)

C

call_htseq() (in module HTSeqCountCluster.htseq_count_cluster) check_job_status() (in module HTSeqCountCluster.htseq_count_cluster)

csvtolist() (in module HTSeqCountCluster.utils) custom() (HTSeqCountCluster.logger.logger.Logger class method)

D

debug() (HTSeqCountCluster.pbsjob.pbsjob.BasePBSJob method)

default() (HTSeqCountCluster.logger.logger.Logger method) deletelog() (HTSeqCountCluster.logger.logger.Logger method)

F

file_to_str() (in module HTSeqCountCluster.pbsjob.pbsutils)

H

htseq_jobber() (in module HTSeqCountCluster.htseq_count_cluster) HTSeqCountCluster module HTSeqCountCluster.htseq_count_cluster module HTSeqCountCluster.logger module HTSeqCountCluster.logger.logger module HTSeqCountCluster.mergecounts module

HTSeqCountCluster.pbsjob module HTSeqCountCluster.pbsjob.pbsconfig module HTSeqCountCluster.pbsjob.pbsjob module HTSeqCountCluster.pbsjob.pbsutils module HTSeqCountCluster.pbsjob.qstat module HTSeqCountCluster.utils module

I

import_temp() (in module HTSeqCountCluster.pbsjob.pbsutils)

L

Logger (class in HTSeqCountCluster.logger.logger)

M

main() (in module HTSeqCountCluster.htseq_count_cluster) (in module HTSeqCountCluster.mergecounts) merge_counts_tables() (in module HTSeqCountCluster.mergecounts) module HTSeqCountCluster HTSeqCountCluster.htseq_count_cluster HTSeqCountCluster.logger HTSeqCountCluster.logger.logger HTSeqCountCluster.mergecounts HTSeqCountCluster.pbsjob HTSeqCountCluster.pbsjob.pbsconfig HTSeqCountCluster.pbsjob.pbsjob HTSeqCountCluster.pbsjob.pbsutils HTSeqCountCluster.pbsjob.qstat HTSeqCountCluster.utils

myjobs() (HTSeqCountCluster.pbsjob.qstat.Qstat method)

P

PBSJob (class in HTSeqCountCluster.pbsjob.pbsjob)

Q

Qstat (class in HTSeqCountCluster.pbsjob.qstat)

qstatinfo() (HTSeqCountCluster.pbsjob.qstat.Qstat method)

R

random_id() (in module HTSeqCountCluster.pbsjob.pbsutils)

S

shutdown() (HTSeqCountCluster.logger.logger.Logger method)

submit_cmd() (HTSeqCountCluster.pbsjob.pbsjob.PBSJob method) submit_code() (HTSeqCountCluster.pbsjob.pbsjob.PBSJob method)

W

watch() (HTSeqCountCluster.pbsjob.qstat.Qstat method)

write_code_file() (in module HTSeqCountCluster.pbsjob.pbsutils)