HTSeqCountCluster package

Subpackages

• HTSeqCountCluster.logger package
  • Submodules
  • HTSeqCountCluster.logger.logger module
  • Module contents
• HTSeqCountCluster.pbsjob package
  • Submodules
  • HTSeqCountCluster.pbsjob.pbsconfig module
  • HTSeqCountCluster.pbsjob.pbsjob module
  • HTSeqCountCluster.pbsjob.pbsutils module
  • HTSeqCountCluster.pbsjob.qstat module
  • Module contents
• HTSeqCountCluster.utils package
  • Module contents

Submodules

HTSeqCountCluster.htseq_count_cluster module

HTSeqCountCluster.mergecounts module

HTSeqCountCluster.mergecounts.main()

Run the merge_counts_tables function.

HTSeqCountCluster.mergecounts.merge_counts_tables(files_dir)

Merge multiple counts tables into 1 counts table.

After running htseq-count-cluster, there will be a counts table for each sample in the output directory. This function will use the genes column as the first column and then insert each subsequent sample name as column header with counts data as the column rows.

Parameters:files_dir (str) – The directory of the individual counts files.

Module contents